Dna
publication ID |
https://doi.org/10.11646/phytotaxa.716.2.4 |
persistent identifier |
https://treatment.plazi.org/id/0386492C-FFFF-3F4A-9AE5-FA342828F872 |
treatment provided by |
Felipe |
scientific name |
Dna |
status |
|
DNA Extraction, PCR Amplification, and Sequencing
For molecular characterization, genomic DNA was isolated from fungal mycelia using the Trelief™ Plant Genomic DNA Kit (TSINGKE Biotech, Shanghai, China) following the manufacturer's instructions, with subsequent storage at -20°C for preservation. Five phylogenetic markers were targeted for amplification: ITS, SSU, LSU, TEF 1, and RPB2. PCR amplification was performed in 30 μL reaction volumes containing: 2 μL genomic DNA template, 1 μL each of forward and reverse primers (ITS9mun/ITS4_KYO1 ( Egger 1995; Toju et al. 2012) for ITS; LR0R/LR5 ( Vilgalys & Hester 1990; Cubeta et al. 1991) for LSU; PNS1/NS41 ( Hibbett 1996) for SSU; EF1-983F/EF1-2218R for TEF 1 ( Carbone & Kohn 1999; Rehner & Buckley 2005); fRPB2-5F/fRPB2-7cR ( Carbone & Kohn 1999; Rehner & Buckley 2005) for RPB2, 11 μL sterile ddH 2 O, and 15 μL 2× Flash PCR Master Mix (containing Taq DNA polymerase, dNTPs, Mg²⁺, and optimized buffer; CoWin Biosciences, Nanjing, China). Thermal cycling parameters included: initial denaturation at 95°C for 3 min; 35 cycles of denaturation at 95°C (15 s), annealing at 55°C (25 s), and extension at 72°C (25 s); followed by final extension at 72°C for 5 min. Successful amplification was confirmed through electrophoretic separation on 1% agarose gels. Sanger sequencing was conducted by Tsingke Biological Technology ( Beijing, China). The newly generated sequences were deposited in GenBank, and their accession numbers are listed in Table 1.
No known copyright restrictions apply. See Agosti, D., Egloff, W., 2009. Taxonomic information exchange and copyright: the Plazi approach. BMC Research Notes 2009, 2:53 for further explanation.